Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphonate transport system permease protein | BXY66_0309 | Not Available | Negative | 297543 - 298400 | 31899.7 |
| phosphonate transport system permease protein | BXY66_0310 | Not Available | Negative | 298397 - 299347 | 35381.3 |
| phosphonate transport system substrate-binding protein | BXY66_0311 | Not Available | Negative | 299394 - 300305 | 33440.1 |
| phosphonate transport system atp-binding protein | BXY66_0312 | Not Available | Negative | 300341 - 301141 | 28768.8 |
| alpha-d-ribose 1-methylphosphonate 5-triphosphate diphosphatase | BXY66_0313 | Not Available | Negative | 301227 - 302384 | 40824.7 |
| alpha-d-ribose 1-methylphosphonate 5-triphosphate synthase subunit phnl | BXY66_0314 | Not Available | Negative | 302371 - 303093 | 26073.3 |
| putative phosphonate transport system atp-binding protein | BXY66_0315 | Not Available | Negative | 303090 - 303887 | 28969.3 |
| alpha-d-ribose 1-methylphosphonate 5-phosphate c-p lyase | BXY66_0316 | Not Available | Negative | 303884 - 304798 | 34123.0 |
| alpha-d-ribose 1-methylphosphonate 5-triphosphate synthase subunit phni | BXY66_0317 | Not Available | Negative | 304795 - 305859 | 38432.1 |
| methylphosphonate degradation complex subunit phnh | BXY66_0318 | Not Available | Negative | 305859 - 306398 | 19332.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
