Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome c biogenesis protein ccda | BXY66_0299 | Not Available | Positive | 286563 - 287984 | 50520.3 |
| hypothetical protein | BXY66_0300 | Not Available | Positive | 287984 - 289141 | 40421.4 |
| hypothetical protein | BXY66_0301 | Not Available | Positive | 289384 - 291153 | 64532.8 |
| phosphonate transport system substrate-binding protein | BXY66_0302 | Not Available | Positive | 291737 - 292606 | 30986.7 |
| phosphonate transport system atp-binding protein | BXY66_0303 | Not Available | Positive | 292635 - 293414 | 27670.4 |
| phosphonate transport system permease protein | BXY66_0304 | Not Available | Positive | 293407 - 294213 | 28067.9 |
| methyltransferase family protein | BXY66_0305 | Not Available | Positive | 294210 - 294854 | 24359.4 |
| alpha-d-ribose 1-methylphosphonate 5-triphosphate diphosphatase | BXY66_0306 | Not Available | Positive | 294855 - 296105 | 44939.7 |
| sugar phosphate isomerase/epimerase | BXY66_0307 | Not Available | Positive | 296102 - 296917 | 30271.9 |
| hypothetical protein | BXY66_0308 | Not Available | Negative | 296920 - 297546 | 22763.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
