Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aspartate semialdehyde dehydrogenase | BXY66_0019 | Not Available | Negative | 17613 - 18635 | 37458.7 |
| putative mfs family arabinose efflux permease | BXY66_0020 | Not Available | Negative | 18768 - 19940 | 41291.5 |
| protein of unknown function (duf3095) | BXY66_0021 | Not Available | Positive | 20117 - 21256 | 41288.1 |
| amino acid/amide abc transporter membrane protein 2 (haat family) | BXY66_0022 | Not Available | Negative | 21278 - 22339 | 37513.5 |
| amino acid/amide abc transporter membrane protein 1 (haat family) | BXY66_0023 | Not Available | Negative | 22342 - 23373 | 36329.7 |
| amino acid/amide abc transporter atp-binding protein 2 (haat family) | BXY66_0024 | Not Available | Negative | 23435 - 24157 | 26144.0 |
| amino acid/amide abc transporter atp-binding protein 1 (haat family) | BXY66_0025 | Not Available | Negative | 24150 - 24926 | 28059.8 |
| amino acid/amide abc transporter substrate-binding protein (haat family) | BXY66_0026 | Not Available | Negative | 25009 - 26184 | 42186.2 |
| aromatic-l-amino-acid decarboxylase | BXY66_0027 | Not Available | Negative | 26326 - 27735 | 52102.9 |
| marr family transcriptional regulator | BXY66_0028 | Not Available | Positive | 27921 - 28289 | 13796.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
