Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trimethylamine-n-oxide reductase (cytochrome c) | BXY66_0279 | Not Available | Positive | 266429 - 269083 | 98164.2 |
| putative dsba family dithiol-disulfide isomerase | BXY66_0280 | Not Available | Negative | 269131 - 269808 | 25081.2 |
| hypothetical protein | BXY66_0281 | Not Available | Negative | 269896 - 270825 | 33150.2 |
| phosphoribosyl 1,2-cyclic phosphate phosphodiesterase | BXY66_0282 | Not Available | Negative | 270866 - 271672 | 30154.9 |
| tatd dnase family protein | BXY66_0283 | Not Available | Negative | 271669 - 272475 | 29579.8 |
| dna polymerase iii delta prime subunit | BXY66_0284 | Not Available | Negative | 272494 - 273642 | 41475.5 |
| thymidylate kinase | BXY66_0285 | Not Available | Negative | 273639 - 274277 | 23396.7 |
| d-alanyl-d-alanine carboxypeptidase (penicillin-binding protein 5/6) | BXY66_0286 | Not Available | Negative | 274274 - 275452 | 42296.8 |
| sporulation related protein | BXY66_0287 | Not Available | Negative | 275465 - 276370 | 31054.5 |
| Trna-ser | Not Available | Not Available | Positive | 276566 - 276652 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
