Shimia isoporae str. DSM 26433

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Shimia

Description

Shimia isoporae strain DSM 26433 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and thrives optimally at a temperature of 29.0°C. This specific temperature preference suggests that S. isoporae may be well-adapted to environments that are moderately warm, potentially indicating a niche within temperate regions or specific habitats where such thermal conditions prevail. As a Gram-negative organism, S. isoporae possesses a distinctive cell wall structure characterized by a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. This structural feature is associated with various functional implications, including resistance to certain antibiotics and the ability to interact with host organisms in unique ways, although specific interactions remain to be elucidated. The aerobic nature of S. isoporae indicates that it relies on oxygen for its metabolic processes, which may influence its ecological roles, such as organic matter decomposition or nutrient cycling in its environment. Understanding the metabolic pathways and ecological interactions of S. isoporae could contribute valuable insights into the dynamics of microbial communities in which it participates. Overall, the traits of Shimia isoporae suggest its potential importance in specific ecological contexts, particularly in environments where aerobic activity is a key component of ecosystem functioning.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusShimia
SpeciesShimia isoporae
StrainDSM 26433

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shimia isoporae strain DSM 26433 Ga0170381_19, whole genome

Gene Summary

Adenine Count

920505 bp

Thymine Count

914254 bp

Guanine Count

1190771 bp

Cytosine Count

1207235 bp

Genome Length

4232765 bp

Protein-coding Genes

4082 genes

Non-Coding Genes

54 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trimethylamine-n-oxide reductase (cytochrome c)BXY66_0279Not AvailablePositive266429 - 26908398164.2
putative dsba family dithiol-disulfide isomeraseBXY66_0280Not AvailableNegative269131 - 26980825081.2
hypothetical proteinBXY66_0281Not AvailableNegative269896 - 27082533150.2
phosphoribosyl 1,2-cyclic phosphate phosphodiesteraseBXY66_0282Not AvailableNegative270866 - 27167230154.9
tatd dnase family proteinBXY66_0283Not AvailableNegative271669 - 27247529579.8
dna polymerase iii delta prime subunitBXY66_0284Not AvailableNegative272494 - 27364241475.5
thymidylate kinaseBXY66_0285Not AvailableNegative273639 - 27427723396.7
d-alanyl-d-alanine carboxypeptidase (penicillin-binding protein 5/6)BXY66_0286Not AvailableNegative274274 - 27545242296.8
sporulation related proteinBXY66_0287Not AvailableNegative275465 - 27637031054.5
Trna-serNot AvailableNot AvailablePositive276566 - 276652Not Available

Displaying genes 281 – 290 of 4136 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.