Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| chemotaxis protein ched | BXY66_0269 | Not Available | Negative | 257016 - 257585 | 20823.0 |
| methyl-accepting chemotaxis protein | BXY66_0270 | Not Available | Negative | 257672 - 259648 | 70950.1 |
| aerotaxis receptor | BXY66_0271 | Not Available | Negative | 259761 - 260960 | 44114.9 |
| hypothetical protein | BXY66_0272 | Not Available | Negative | 260984 - 261328 | 12274.6 |
| response regulator receiver protein | BXY66_0273 | Not Available | Negative | 261350 - 261736 | 14250.5 |
| chemotaxis protein methyltransferase cher | BXY66_0274 | Not Available | Negative | 261733 - 262641 | 33383.5 |
| purine-binding chemotaxis protein chew | BXY66_0275 | Not Available | Negative | 262638 - 263108 | 17032.8 |
| two-component system chemotaxis sensor kinase chea | BXY66_0276 | Not Available | Negative | 263110 - 265317 | 78235.5 |
| two-component system chemotaxis response regulator chey | BXY66_0277 | Not Available | Negative | 265331 - 265693 | 12799.6 |
| anti-anti-sigma regulatory factor | BXY66_0278 | Not Available | Negative | 265690 - 265995 | 10701.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
