Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methyltransferase family protein | BXY66_0259 | Not Available | Negative | 248467 - 249087 | 22176.2 |
| cytochrome c oxidase subunit 1 | BXY66_0260 | Not Available | Negative | 249168 - 250847 | 62567.6 |
| 2-methylisocitrate lyase-like pep mutase family enzyme | BXY66_0261 | Not Available | Positive | 251079 - 251930 | 29055.4 |
| rimj/riml family protein n-acetyltransferase | BXY66_0262 | Not Available | Negative | 251946 - 252440 | 18632.9 |
| cytochrome c | BXY66_0263 | Not Available | Negative | 252548 - 252991 | 15542.4 |
| opacity protein-like surface antigen | BXY66_0264 | Not Available | Negative | 253243 - 253827 | 19974.1 |
| lipoyl(octanoyl) transferase | BXY66_0265 | Not Available | Negative | 253964 - 254626 | 24854.6 |
| hypothetical protein | BXY66_0266 | Not Available | Positive | 254680 - 255114 | 15583.6 |
| Trna-leu | Not Available | Not Available | Positive | 255307 - 255390 | Not Available |
| hypothetical protein | BXY66_0268 | Not Available | Negative | 255504 - 256808 | 47552.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
