Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pyruvate carboxylase | BXY66_0249 | Not Available | Negative | 235607 - 239047 | 125895.0 |
| rhodanese-related sulfurtransferase | BXY66_0250 | Not Available | Positive | 239330 - 239785 | 16472.9 |
| l-lactate dehydrogenase (cytochrome) | BXY66_0251 | Not Available | Negative | 239801 - 240934 | 41151.4 |
| rep family atp-dependent dna helicase | BXY66_0252 | Not Available | Positive | 240957 - 243479 | 93641.7 |
| glutathione s-transferase | BXY66_0253 | Not Available | Positive | 243649 - 244278 | 22965.6 |
| nadph2:quinone reductase | BXY66_0254 | Not Available | Negative | 244285 - 245259 | 33719.6 |
| uncharacterized protein yjis (duf1127 family) | BXY66_0255 | Not Available | Negative | 245840 - 246058 | 8257.86 |
| atp-binding protein involved in chromosome partitioning | BXY66_0256 | Not Available | Positive | 246309 - 247397 | 37621.2 |
| uncharacterized protein (tigr02118 family) | BXY66_0257 | Not Available | Negative | 247452 - 247760 | 10711.8 |
| putative membrane protein | BXY66_0258 | Not Available | Negative | 247907 - 248389 | 18227.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
