Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative abc transport system atp-binding protein | BXY66_0229 | Not Available | Positive | 213236 - 213964 | 26348.4 |
| putative abc transport system permease protein | BXY66_0230 | Not Available | Positive | 213969 - 216332 | 84500.3 |
| hlyd family secretion protein | BXY66_0231 | Not Available | Positive | 216338 - 217573 | 43933.4 |
| hypothetical protein | BXY66_0232 | Not Available | Positive | 217875 - 218375 | 18946.3 |
| pyrroline-5-carboxylate reductase | BXY66_0233 | Not Available | Positive | 218406 - 219221 | 27505.3 |
| pp_00231 | BXY66_0234 | Not Available | Positive | 219214 - 219552 | Not Available |
| hydroxypyruvate reductase | BXY66_0235 | Not Available | Positive | 219549 - 220502 | 34594.8 |
| thymidine kinase | BXY66_0236 | Not Available | Negative | 220551 - 221141 | 21979.2 |
| hypothetical protein | BXY66_0237 | Not Available | Positive | 221490 - 221948 | 16716.8 |
| dna-binding narl/fixj family response regulator | BXY66_0238 | Not Available | Positive | 222065 - 222850 | 29600.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
