Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-d-ribose 1-methylphosphonate 5-triphosphate diphosphatase | BXY66_0209 | Not Available | Positive | 194473 - 195609 | 40200.8 |
| rimj/riml family protein n-acetyltransferase | BXY66_0210 | Not Available | Positive | 195632 - 196096 | 17291.8 |
| 5-(carboxyamino)imidazole ribonucleotide synthase | BXY66_0211 | Not Available | Negative | 196093 - 197217 | 40225.2 |
| 5-(carboxyamino)imidazole ribonucleotide mutase | BXY66_0212 | Not Available | Negative | 197162 - 197653 | 16953.6 |
| hypothetical protein | BXY66_0213 | Not Available | Negative | 197733 - 197957 | 8638.44 |
| hsp20 family molecular chaperone ibpa | BXY66_0214 | Not Available | Positive | 198158 - 198571 | 15397.3 |
| hypothetical protein | BXY66_0215 | Not Available | Positive | 198576 - 198818 | 9129.6 |
| homocysteine s-methyltransferase | BXY66_0216 | Not Available | Positive | 199016 - 199951 | 33785.9 |
| hypothetical protein | BXY66_0217 | Not Available | Negative | 200085 - 200441 | 13157.4 |
| hypothetical protein | BXY66_0218 | Not Available | Negative | 200441 - 202594 | 79405.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
