Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome c556 | BXY66_0009 | Not Available | Negative | 7122 - 7544 | 14787.0 |
| protein imub | BXY66_0010 | Not Available | Positive | 7662 - 9323 | 60710.2 |
| nadph:quinone reductase-like zn-dependent oxidoreductase | BXY66_0011 | Not Available | Negative | 9388 - 10470 | 38347.7 |
| uncharacterized protein duf2794 | BXY66_0012 | Not Available | Positive | 10795 - 11142 | 13207.3 |
| guanidinopropionase | BXY66_0013 | Not Available | Negative | 11267 - 12226 | 34503.0 |
| cell wall-associated nlpc family hydrolase | BXY66_0014 | Not Available | Negative | 12219 - 13112 | 32134.9 |
| leucyl aminopeptidase | BXY66_0015 | Not Available | Negative | 13109 - 14518 | 49194.0 |
| hypothetical protein | BXY66_0016 | Not Available | Negative | 14612 - 14992 | 14436.4 |
| hypothetical protein | BXY66_0017 | Not Available | Negative | 15240 - 15377 | 5105.17 |
| uncharacterized protein (tigr02231 family) | BXY66_0018 | Not Available | Negative | 15785 - 17407 | 58574.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
