Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BXY66_0179 | Not Available | Negative | 169750 - 170223 | 18351.7 |
| riboflavin kinase/fmn adenylyltransferase | BXY66_0180 | Not Available | Negative | 170220 - 171152 | 33466.8 |
| 3-hydroxybutyryl-coa dehydratase | BXY66_0181 | Not Available | Negative | 171204 - 171647 | 16083.4 |
| had superfamily hydrolase (tigr01459 family) | BXY66_0182 | Not Available | Negative | 171761 - 172636 | 31512.5 |
| hypothetical protein | BXY66_0183 | Not Available | Negative | 172784 - 173596 | 30449.0 |
| dna-binding marr family transcriptional regulator | BXY66_0184 | Not Available | Positive | 173656 - 174138 | 17707.7 |
| putative alpha/beta hydrolase | BXY66_0185 | Not Available | Positive | 174138 - 175043 | 33214.2 |
| manganese-dependent inorganic pyrophosphatase | BXY66_0186 | Not Available | Negative | 175121 - 176035 | 32753.1 |
| hypothetical protein | BXY66_0187 | Not Available | Negative | 176047 - 176160 | 4275.26 |
| hypothetical protein | BXY66_0188 | Not Available | Negative | 176157 - 177158 | 36663.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
