Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| f-type h+-transporting atpase subunit gamma | BXY66_0169 | Not Available | Positive | 161723 - 162595 | 31068.1 |
| atp synthase f1 subcomplex beta subunit | BXY66_0170 | Not Available | Positive | 162613 - 164037 | 50654.3 |
| atp synthase f1 subcomplex epsilon subunit | BXY66_0171 | Not Available | Positive | 164049 - 164444 | 13691.1 |
| taurine dioxygenase | BXY66_0172 | Not Available | Negative | 164503 - 165336 | 30651.2 |
| h-type lectin domain-containing protein | BXY66_0173 | Not Available | Positive | 165484 - 165837 | 13568.9 |
| ribose-phosphate pyrophosphokinase | BXY66_0174 | Not Available | Negative | 165903 - 166919 | 36865.6 |
| 2-hydroxychromene-2-carboxylate isomerase | BXY66_0175 | Not Available | Positive | 167034 - 167633 | 21681.4 |
| pimeloyl-acp methyl ester carboxylesterase | BXY66_0176 | Not Available | Positive | 167643 - 168440 | 28320.2 |
| hypothetical protein | BXY66_0177 | Not Available | Negative | 168480 - 168698 | 8122.74 |
| l-threonine aldolase | BXY66_0178 | Not Available | Negative | 168704 - 169750 | 37706.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
