Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acetyl-coa acetyltransferase | BXY66_0129 | Not Available | Negative | 120557 - 121741 | 41483.1 |
| dna-binding transcriptional lysr family regulator | BXY66_0130 | Not Available | Positive | 121847 - 122755 | 32825.4 |
| pas domain s-box-containing protein | BXY66_0131 | Not Available | Negative | 122759 - 125344 | 94132.5 |
| hypothetical protein | BXY66_0132 | Not Available | Negative | 125395 - 125916 | 18610.3 |
| luxr family two component transcriptional regulator | BXY66_0133 | Not Available | Positive | 126210 - 126821 | 22028.0 |
| hypothetical protein | BXY66_0134 | Not Available | Positive | 126975 - 127769 | 29341.2 |
| hypothetical protein | BXY66_0135 | Not Available | Positive | 127880 - 128548 | 25383.4 |
| putative peptidoglycan binding protein | BXY66_0136 | Not Available | Positive | 128569 - 129108 | 18998.2 |
| uncharacterized protein duf2219 | BXY66_0137 | Not Available | Positive | 129258 - 130214 | 34883.4 |
| intein | BXY66_0138 | Not Available | Positive | 130323 - 131393 | 38786.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
