Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 7-alpha-hydroxysteroid dehydrogenase | BXY66_0119 | Not Available | Positive | 111537 - 112337 | 28362.9 |
| coproporphyrinogen oxidase | BXY66_0120 | Not Available | Positive | 112355 - 113248 | 33252.1 |
| hypothetical protein | BXY66_0121 | Not Available | Negative | 113315 - 113884 | 21105.7 |
| hydroxymethylbilane synthase | BXY66_0122 | Not Available | Negative | 113989 - 115098 | 39813.6 |
| uroporphyrinogen decarboxylase | BXY66_0123 | Not Available | Positive | 115156 - 116196 | 37756.0 |
| crotonobetainyl-coa:carnitine coa-transferase caib-like acyl-coa transferase | BXY66_0124 | Not Available | Negative | 116278 - 117351 | 37759.1 |
| 3-oxoacyl-[acyl-carrier protein] reductase | BXY66_0125 | Not Available | Negative | 117472 - 118347 | 30429.4 |
| acyl-coa dehydrogenase/hypothetical protein | BXY66_0126 | Not Available | Negative | 118487 - 119635 | 41935.2 |
| acyl dehydratase | BXY66_0127 | Not Available | Negative | 119660 - 120073 | 14568.4 |
| acyl dehydratase | BXY66_0128 | Not Available | Negative | 120086 - 120553 | 16429.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
