Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arac-like dna-binding protein | BXY66_0109 | Not Available | Positive | 100483 - 101478 | 37552.2 |
| cytochrome c oxidase accessory protein fixg | BXY66_0110 | Not Available | Positive | 101599 - 103020 | 53861.4 |
| nitrogen fixation protein fixh | BXY66_0111 | Not Available | Positive | 103020 - 103481 | 16680.1 |
| cu2+-exporting atpase | BXY66_0112 | Not Available | Positive | 103484 - 105670 | 75799.4 |
| cbb3-type cytochrome oxidase maturation protein | BXY66_0113 | Not Available | Positive | 105675 - 105833 | 5777.92 |
| d-lactate dehydrogenase | BXY66_0114 | Not Available | Negative | 105854 - 107542 | 61970.9 |
| d-alanyl-d-alanine carboxypeptidase | BXY66_0115 | Not Available | Negative | 107718 - 109112 | 49153.5 |
| putative hydrolase of the had superfamily | BXY66_0116 | Not Available | Negative | 109342 - 110043 | 25934.9 |
| atp-dependent clp protease adaptor protein clps | BXY66_0117 | Not Available | Positive | 110136 - 110477 | 12957.8 |
| 16s rrna (guanine1207-n2)-methyltransferase | BXY66_0118 | Not Available | Positive | 110505 - 111488 | 35574.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
