Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 5'-methylthioadenosine phosphorylase | BXY66_0992 | Not Available | Negative | 983291 - 984178 | 31853.9 |
| hypothetical protein | BXY66_0993 | Not Available | Negative | 984296 - 984970 | 25702.5 |
| hypothetical protein | BXY66_0994 | Not Available | Negative | 985014 - 985757 | 27006.8 |
| hypothetical protein | BXY66_0995 | Not Available | Negative | 985811 - 986263 | 16119.1 |
| protein of unknown function (duf2971) | BXY66_0996 | Not Available | Positive | 986449 - 987096 | 24708.3 |
| dna topoisomerase iv subunit b | BXY66_0997 | Not Available | Negative | 987093 - 989051 | 72079.9 |
| udp-apiose/xylose synthase | BXY66_0998 | Not Available | Positive | 989308 - 990378 | 39007.1 |
| uncharacterized protein duf563 | BXY66_0999 | Not Available | Positive | 990389 - 991318 | 35025.9 |
| putative dienelactone hydrolase | BXY66_1000 | Not Available | Negative | 991372 - 992655 | 45539.5 |
| polyphosphate kinase 2 | BXY66_1001 | Not Available | Positive | 992866 - 993813 | 36448.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
