Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | DSM 17135 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1232116 bp
Thymine Count
1229996 bp
Guanine Count
991003 bp
Cytosine Count
968209 bp
Genome Length
4421324 bp
Protein-coding Genes
3919 genes
Non-Coding Genes
104 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribonuclease r | BACPLE_00619 | Not Available | Negative | 713934 - 716084 | 81638.2 |
| hypothetical protein | BACPLE_00620 | Not Available | Positive | 716118 - 716240 | 4905.15 |
| cation diffusion facilitator family transporter | BACPLE_00621 | Not Available | Positive | 716233 - 717135 | 32572.5 |
| nad dependent epimerase/dehydratase family protein | BACPLE_00622 | Not Available | Positive | 717140 - 718150 | 38990.2 |
| pap2 family protein | BACPLE_00623 | Not Available | Positive | 718141 - 719121 | 38199.4 |
| tim-barrel protein, nifr3 family | BACPLE_00624 | Not Available | Negative | 719137 - 720123 | 36895.2 |
| peptidase, u32 family | BACPLE_00625 | Not Available | Positive | 720212 - 721483 | 47593.3 |
| hypothetical protein | BACPLE_00626 | Not Available | Positive | 721766 - 723262 | 57765.6 |
| trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase | BACPLE_00627 | Not Available | Negative | 723263 - 724312 | 39695.9 |
| glycosyl hydrolase family 3 c-terminal domain protein | BACPLE_00628 | Not Available | Negative | 724323 - 727061 | 102018.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

