Phocaeicola plebeius DSM 17135

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola plebeius DSM 17135 is a Gram-negative, non-sporulating rod-shaped bacterium classified within the intestinal microflora of animals. This organism is a chemoheterotroph, deriving its energy from organic compounds, and operates as an anaerobe, thriving in oxygen-depleted environments typical of the gastrointestinal tract. As a member of the animal intestinal microbiota, Phocaeicola plebeius may play a significant role in the digestive processes and overall health of its host. Its absence or imbalance could potentially disrupt normal gut function, highlighting its importance in maintaining the homeostasis of the intestinal ecosystem. Furthermore, the specific adaptation to an anaerobic lifestyle suggests that Phocaeicola plebeius may be involved in the fermentation processes, contributing to the breakdown of complex carbohydrates and the production of short-chain fatty acids, which are beneficial for host metabolism. Overall, the traits of Phocaeicola plebeius underline its specialized ecological niche and suggest potential implications for gut health and microbial interactions within the animal intestinal environment.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola plebeius
StrainDSM 17135

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Phocaeicola plebeius DSM 17135
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatAnimal intestinal microflora
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Phocaeicola plebeius DSM 17135 B_plebeius-2.0.1_Cont2727, whole

Gene Summary

Adenine Count

1232116 bp

Thymine Count

1229996 bp

Guanine Count

991003 bp

Cytosine Count

968209 bp

Genome Length

4421324 bp

Protein-coding Genes

3919 genes

Non-Coding Genes

104 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
efflux abc transporter, permease proteinBACPLE_03852Not AvailablePositive4278497 - 428086388945.6
superoxide dismutase, mn/fe familyBACPLE_03853Not AvailableNegative4280936 - 428150821893.1
glutamine-fructose-6-phosphate transaminase (isomerizing)BACPLE_03854Not AvailablePositive4281718 - 428356266772.7
rna polymerase sigma-70 factorBACPLE_03855Not AvailablePositive4283913 - 428447922453.8
sigma factor regulatory protein, fecr/pupr familyBACPLE_03856Not AvailablePositive4284569 - 428557338441.8
tonb-linked outer membrane protein, susc/raga familyBACPLE_03857Not AvailablePositive4285736 - 4289089124999.0
susd family proteinBACPLE_03858Not AvailablePositive4289141 - 429098870114.3
hypothetical proteinBACPLE_03859Not AvailablePositive4291094 - 429244950208.6
3-oxo-5-alpha-steroid 4-dehydrogenaseBACPLE_03860Not AvailablePositive4292582 - 429350235054.3
oxidoreductase, fad/fmn-binding proteinBACPLE_03861Not AvailablePositive4293652 - 429474040475.4

Displaying genes 3851 – 3860 of 4023 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.