Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | DSM 17135 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1232116 bp
Thymine Count
1229996 bp
Guanine Count
991003 bp
Cytosine Count
968209 bp
Genome Length
4421324 bp
Protein-coding Genes
3919 genes
Non-Coding Genes
104 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rnd transporter, hae1/hme family, permease protein | BACPLE_03311 | Not Available | Positive | 3640702 - 3643743 | 112794.0 |
| outer membrane efflux protein | BACPLE_03312 | Not Available | Positive | 3643829 - 3645106 | 47596.2 |
| histidine kinase | BACPLE_03313 | Not Available | Positive | 3645143 - 3646204 | 40759.1 |
| lyttr dna-binding domain protein | BACPLE_03314 | Not Available | Positive | 3646191 - 3646973 | 30196.5 |
| mate efflux family protein | BACPLE_03315 | Not Available | Positive | 3647246 - 3648616 | 49861.4 |
| oxidoreductase, short chain dehydrogenase/reductase family protein | BACPLE_03316 | Not Available | Negative | 3648606 - 3649349 | 28106.6 |
| hypothetical protein | BACPLE_03317 | Not Available | Negative | 3649349 - 3653596 | 161959.0 |
| hypothetical protein | BACPLE_03318 | Not Available | Negative | 3653621 - 3654433 | 30041.2 |
| copper-exporting atpase | BACPLE_03319 | Not Available | Negative | 3654510 - 3657050 | 92281.7 |
| trka c-terminal domain protein | BACPLE_03320 | Not Available | Positive | 3657189 - 3659465 | 83988.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

