Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | DSM 17135 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1232116 bp
Thymine Count
1229996 bp
Guanine Count
991003 bp
Cytosine Count
968209 bp
Genome Length
4421324 bp
Protein-coding Genes
3919 genes
Non-Coding Genes
104 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative undecaprenyl-diphosphatase uppp | BACPLE_00264 | Not Available | Positive | 303985 - 304788 | 28757.3 |
| trna pseudouridine synthase b | BACPLE_00265 | Not Available | Positive | 304819 - 305523 | 26473.2 |
| s-adenosylmethionine:trna ribosyltransferase-isomerase | BACPLE_00266 | Not Available | Positive | 305541 - 306596 | 40342.6 |
| 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase | BACPLE_00267 | Not Available | Positive | 306608 - 307066 | 17088.5 |
| methionine adenosyltransferase | BACPLE_00268 | Not Available | Positive | 307295 - 308590 | 47810.9 |
| tigr00730 family protein | BACPLE_00269 | Not Available | Positive | 308674 - 309303 | 23299.6 |
| hypothetical protein | BACPLE_00270 | Not Available | Positive | 309300 - 310109 | 31444.6 |
| uroporphyrinogen-iii synthase | BACPLE_00271 | Not Available | Positive | 310115 - 310861 | 28446.3 |
| putative ribonuclease p protein component | BACPLE_00272 | Not Available | Positive | 310935 - 311330 | 14874.5 |
| conserved hypothetical protein yidd | BACPLE_00273 | Not Available | Positive | 311327 - 311548 | 8424.46 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

