Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | DSM 17135 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1232116 bp
Thymine Count
1229996 bp
Guanine Count
991003 bp
Cytosine Count
968209 bp
Genome Length
4421324 bp
Protein-coding Genes
3919 genes
Non-Coding Genes
104 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbohydrate-selective porin, oprb family | BACPLE_02961 | Not Available | Positive | 3257560 - 3258600 | 39078.0 |
| glycosyl hydrolase family 20, catalytic domain protein | BACPLE_02962 | Not Available | Negative | 3258607 - 3260688 | 78613.3 |
| susd family protein | BACPLE_02963 | Not Available | Negative | 3260799 - 3262571 | 65823.1 |
| tonb-linked outer membrane protein, susc/raga family | BACPLE_02964 | Not Available | Negative | 3262579 - 3265848 | 120657.0 |
| Trna-ser | Not Available | Not Available | Positive | 3266166 - 3266250 | Not Available |
| muts2 family protein | BACPLE_02966 | Not Available | Positive | 3266398 - 3268899 | 94816.0 |
| l-serine ammonia-lyase | BACPLE_02967 | Not Available | Positive | 3269028 - 3270179 | 41628.5 |
| 6-o-methylguanine dna methyltransferase, dna binding domain protein | BACPLE_02968 | Not Available | Positive | 3270375 - 3270881 | 18608.3 |
| had hydrolase, family ia, variant 1 | BACPLE_02969 | Not Available | Positive | 3270888 - 3271532 | 23957.8 |
| ribosomal protein l21 | BACPLE_02970 | Not Available | Positive | 3271591 - 3271998 | 15037.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

