Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | DSM 17135 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1232116 bp
Thymine Count
1229996 bp
Guanine Count
991003 bp
Cytosine Count
968209 bp
Genome Length
4421324 bp
Protein-coding Genes
3919 genes
Non-Coding Genes
104 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| polygalacturonase (pectinase) | BACPLE_00254 | Not Available | Positive | 292350 - 293789 | 53515.4 |
| fg-gap repeat protein | BACPLE_00255 | Not Available | Positive | 293806 - 295743 | 71411.5 |
| glycosyl hydrolase, family 88 | BACPLE_00256 | Not Available | Positive | 295774 - 297924 | 80620.7 |
| succinate coa transferase | BACPLE_00257 | Not Available | Negative | 298000 - 299496 | 54180.0 |
| hypothetical protein | BACPLE_00258 | Not Available | Negative | 299540 - 299887 | 13281.1 |
| pp_00255 | BACPLE_00259 | Not Available | Positive | 300010 - 301383 | Not Available |
| pspc domain protein | BACPLE_00260 | Not Available | Negative | 301591 - 301791 | 7447.22 |
| methyltransferase domain protein | BACPLE_00261 | Not Available | Positive | 302185 - 302826 | 24756.9 |
| efflux abc transporter, permease protein | BACPLE_00262 | Not Available | Positive | 302833 - 303702 | 32611.6 |
| hypothetical protein | BACPLE_00263 | Not Available | Positive | 303731 - 303979 | 9249.69 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

