Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | DSM 17135 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1232116 bp
Thymine Count
1229996 bp
Guanine Count
991003 bp
Cytosine Count
968209 bp
Genome Length
4421324 bp
Protein-coding Genes
3919 genes
Non-Coding Genes
104 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| permease, yjgp/yjgq family | BACPLE_02270 | Not Available | Positive | 2525565 - 2527457 | 72478.1 |
| 3,4-dihydroxy-2-butanone-4-phosphate synthase | BACPLE_02271 | Not Available | Positive | 2527473 - 2528687 | 44939.2 |
| hypothetical protein | BACPLE_02272 | Not Available | Positive | 2528700 - 2529401 | 25957.7 |
| aminotransferase, class i/ii | BACPLE_02273 | Not Available | Positive | 2529486 - 2530679 | 43398.1 |
| hypothetical protein | BACPLE_02274 | Not Available | Negative | 2530924 - 2532183 | 48076.3 |
| glycosyl hydrolase, family 88 | BACPLE_02275 | Not Available | Negative | 2532271 - 2533542 | 48129.2 |
| susd family protein | BACPLE_02276 | Not Available | Negative | 2533585 - 2535303 | 65566.4 |
| tonb-linked outer membrane protein, susc/raga family | BACPLE_02277 | Not Available | Negative | 2535322 - 2538513 | 117696.0 |
| hypothetical protein | BACPLE_02278 | Not Available | Positive | 2538745 - 2540277 | 58869.4 |
| heparinase ii/iii-like protein | BACPLE_02279 | Not Available | Positive | 2540284 - 2542128 | 69369.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

