Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | DSM 17135 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1232116 bp
Thymine Count
1229996 bp
Guanine Count
991003 bp
Cytosine Count
968209 bp
Genome Length
4421324 bp
Protein-coding Genes
3919 genes
Non-Coding Genes
104 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transketolase, thiamine diphosphate binding domain protein | BACPLE_02209 | Not Available | Negative | 2443759 - 2445774 | 72612.4 |
| carbohydrate kinase, fggy family protein | BACPLE_02210 | Not Available | Negative | 2445909 - 2447504 | 57829.2 |
| l-arabinose isomerase | BACPLE_02211 | Not Available | Negative | 2447613 - 2449139 | 57070.3 |
| putative l-ribulose-5-phosphate 4-epimerase | BACPLE_02212 | Not Available | Negative | 2449180 - 2449869 | 25178.0 |
| hydrolase, nudix family | BACPLE_02213 | Not Available | Negative | 2449874 - 2450551 | 25989.2 |
| aldose 1-epimerase | BACPLE_02214 | Not Available | Negative | 2450601 - 2451758 | 41977.4 |
| hypothetical protein | BACPLE_02215 | Not Available | Negative | 2451755 - 2451916 | 6549.03 |
| transporter, sss family | BACPLE_02216 | Not Available | Negative | 2451938 - 2453683 | 64692.4 |
| hypothetical protein | BACPLE_02217 | Not Available | Positive | 2453977 - 2456712 | 102505.0 |
| transcriptional regulator, arac family | BACPLE_02218 | Not Available | Positive | 2456955 - 2459915 | 111960.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

