Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | DSM 17135 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1232116 bp
Thymine Count
1229996 bp
Guanine Count
991003 bp
Cytosine Count
968209 bp
Genome Length
4421324 bp
Protein-coding Genes
3919 genes
Non-Coding Genes
104 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| diaminopimelate decarboxylase | BACPLE_02169 | Not Available | Negative | 2405291 - 2406451 | 42788.5 |
| amino acid kinase family | BACPLE_02170 | Not Available | Negative | 2406559 - 2407884 | 49426.2 |
| abc transporter, atp-binding protein | BACPLE_02171 | Not Available | Negative | 2408000 - 2408680 | 25692.1 |
| phosphoribosyl-atp diphosphatase | BACPLE_02172 | Not Available | Negative | 2408690 - 2409301 | 23525.2 |
| imidazoleglycerol phosphate synthase, cyclase subunit | BACPLE_02173 | Not Available | Negative | 2409337 - 2410092 | 27305.5 |
| putative 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase | BACPLE_02174 | Not Available | Negative | 2410115 - 2410837 | 26244.8 |
| imidazole glycerol phosphate synthase, glutamine amidotransferase subunit | BACPLE_02175 | Not Available | Negative | 2410859 - 2411449 | 22155.8 |
| Trna-asp | Not Available | Not Available | Positive | 2411707 - 2411780 | Not Available |
| hypothetical protein | BACPLE_02177 | Not Available | Positive | 2411935 - 2412054 | 4821.98 |
| glycerophosphodiester phosphodiesterase family protein | BACPLE_02178 | Not Available | Negative | 2412025 - 2412882 | 32966.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

