Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | DSM 17135 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1232116 bp
Thymine Count
1229996 bp
Guanine Count
991003 bp
Cytosine Count
968209 bp
Genome Length
4421324 bp
Protein-coding Genes
3919 genes
Non-Coding Genes
104 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| class ii glutamine amidotransferase | BACPLE_01998 | Not Available | Negative | 2219188 - 2221071 | 71691.0 |
| hypothetical protein | BACPLE_01999 | Not Available | Positive | 2221147 - 2221266 | 4867.26 |
| class ii glutamine amidotransferase | BACPLE_02000 | Not Available | Positive | 2221375 - 2225907 | 166819.0 |
| pyridine nucleotide-disulfide oxidoreductase | BACPLE_02001 | Not Available | Positive | 2225938 - 2227281 | 49030.9 |
| asparagine synthase (glutamine-hydrolyzing) | BACPLE_02002 | Not Available | Positive | 2227319 - 2228989 | 62633.5 |
| diaminopimelate epimerase | BACPLE_02003 | Not Available | Positive | 2229004 - 2229810 | 29251.1 |
| ll-diaminopimelate aminotransferase | BACPLE_02004 | Not Available | Positive | 2229823 - 2231058 | 45485.8 |
| hypothetical protein | BACPLE_02005 | Not Available | Negative | 2231072 - 2231752 | 25717.9 |
| hypothetical protein | BACPLE_02006 | Not Available | Negative | 2231769 - 2232476 | 27056.2 |
| hypothetical protein | BACPLE_02007 | Not Available | Negative | 2232617 - 2233978 | 52931.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

