Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | DSM 17135 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1232116 bp
Thymine Count
1229996 bp
Guanine Count
991003 bp
Cytosine Count
968209 bp
Genome Length
4421324 bp
Protein-coding Genes
3919 genes
Non-Coding Genes
104 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glucosamine-6-phosphate deaminase | BACPLE_01828 | Not Available | Negative | 2003837 - 2004628 | 29012.7 |
| rok family protein | BACPLE_01829 | Not Available | Positive | 2004811 - 2006016 | 44279.9 |
| had hydrolase, family ia, variant 3 | BACPLE_01830 | Not Available | Negative | 2006086 - 2006826 | 27472.0 |
| glucose-6-phosphate isomerase | BACPLE_01831 | Not Available | Negative | 2006951 - 2008300 | 49939.9 |
| nad-dependent glycerol-3-phosphate dehydrogenase c-terminal domain protein | BACPLE_01832 | Not Available | Negative | 2008316 - 2009311 | 37235.4 |
| lysine--trna ligase | BACPLE_01833 | Not Available | Negative | 2009384 - 2011111 | 66223.1 |
| hydrolase, carbon-nitrogen family | BACPLE_01834 | Not Available | Positive | 2011466 - 2012239 | 28972.2 |
| putative indolepyruvate ferredoxin oxidoreductase, alpha subunit | BACPLE_01835 | Not Available | Positive | 2012252 - 2013865 | 58140.8 |
| indolepyruvate oxidoreductase subunit beta | BACPLE_01836 | Not Available | Positive | 2013862 - 2014449 | 21292.0 |
| aminotransferase, class i/ii | BACPLE_01837 | Not Available | Positive | 2014456 - 2015772 | 48540.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

