Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | DSM 17135 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1232116 bp
Thymine Count
1229996 bp
Guanine Count
991003 bp
Cytosine Count
968209 bp
Genome Length
4421324 bp
Protein-coding Genes
3919 genes
Non-Coding Genes
104 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytidine and deoxycytidylate deaminase zinc-binding region | BACPLE_01778 | Not Available | Negative | 1935420 - 1935854 | 16244.6 |
| hypothetical protein | BACPLE_01779 | Not Available | Negative | 1935865 - 1936338 | 18152.7 |
| peptidase family m3 | BACPLE_01780 | Not Available | Negative | 1936347 - 1938386 | 78505.7 |
| cyclic nucleotide-binding domain protein | BACPLE_01781 | Not Available | Negative | 1938420 - 1939106 | 26813.7 |
| membrane protein, marc family | BACPLE_01782 | Not Available | Positive | 1939290 - 1939889 | 21943.0 |
| trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase | BACPLE_01783 | Not Available | Positive | 1939923 - 1941029 | 41399.5 |
| sel1 repeat protein | BACPLE_01784 | Not Available | Positive | 1941047 - 1942147 | 41892.7 |
| had hydrolase, family ia, variant 1 | BACPLE_01785 | Not Available | Negative | 1942300 - 1942956 | 24521.2 |
| dihydroneopterin aldolase | BACPLE_01786 | Not Available | Negative | 1942963 - 1943334 | 14164.1 |
| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent | BACPLE_01787 | Not Available | Negative | 1943438 - 1946089 | 100619.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

