Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | DSM 17135 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1232116 bp
Thymine Count
1229996 bp
Guanine Count
991003 bp
Cytosine Count
968209 bp
Genome Length
4421324 bp
Protein-coding Genes
3919 genes
Non-Coding Genes
104 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| efflux transporter, rnd family, mfp subunit | BACPLE_01608 | Not Available | Positive | 1766457 - 1767650 | 43322.5 |
| heavy metal efflux pump, czca family | BACPLE_01609 | Not Available | Positive | 1767663 - 1770776 | 113718.0 |
| outer membrane efflux protein | BACPLE_01610 | Not Available | Positive | 1770773 - 1771948 | 44379.1 |
| catalase | BACPLE_01611 | Not Available | Negative | 1772026 - 1773480 | 55679.6 |
| hypothetical protein | BACPLE_01612 | Not Available | Negative | 1773499 - 1774020 | 20050.6 |
| lysr substrate binding domain protein | BACPLE_01613 | Not Available | Positive | 1774146 - 1775039 | 33388.6 |
| homoserine o-succinyltransferase | BACPLE_01614 | Not Available | Positive | 1775141 - 1776064 | 36105.1 |
| peptidase, u32 family | BACPLE_01615 | Not Available | Positive | 1776064 - 1777905 | 69433.4 |
| hypothetical protein | BACPLE_01616 | Not Available | Positive | 1777902 - 1778861 | 36838.2 |
| putative crispr-associated protein csc1 | BACPLE_01617 | Not Available | Positive | 1778924 - 1780567 | 62458.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

