Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | DSM 17135 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1232116 bp
Thymine Count
1229996 bp
Guanine Count
991003 bp
Cytosine Count
968209 bp
Genome Length
4421324 bp
Protein-coding Genes
3919 genes
Non-Coding Genes
104 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aminotransferase, class iii | BACPLE_01447 | Not Available | Positive | 1603433 - 1604584 | 42339.3 |
| phosphomethylpyrimidine kinase | BACPLE_01448 | Not Available | Positive | 1604559 - 1605377 | 29925.0 |
| hypothetical protein | BACPLE_01449 | Not Available | Positive | 1605401 - 1605934 | 20036.1 |
| polygalacturonase (pectinase) | BACPLE_01450 | Not Available | Positive | 1605953 - 1607488 | 56853.5 |
| cobw/p47k family protein | BACPLE_01451 | Not Available | Negative | 1607585 - 1608838 | 48297.3 |
| iron-sulfur cluster repair di-iron protein | BACPLE_01452 | Not Available | Positive | 1609012 - 1609740 | 27681.4 |
| hydrogenase maturation gtpase hydf | BACPLE_01453 | Not Available | Negative | 1609810 - 1610994 | 44056.6 |
| iron-only hydrogenase maturation rsam protein hydg | BACPLE_01454 | Not Available | Negative | 1611023 - 1612441 | 53799.4 |
| iron-only hydrogenase maturation rsam protein hyde | BACPLE_01455 | Not Available | Negative | 1612456 - 1613502 | 39317.4 |
| 4fe-4s binding domain protein | BACPLE_01456 | Not Available | Negative | 1613507 - 1614982 | 54815.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

