Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SHM7688_00952 | Not Available | Positive | 985827 - 986987 | 43358.4 |
| chromosome segregation protein smc | SHM7688_00953 | Not Available | Positive | 987040 - 989394 | 87186.4 |
| hypothetical protein | SHM7688_00954 | Not Available | Positive | 989394 - 991568 | 78293.9 |
| putative glucosyl-3-phosphoglycerate synthase | SHM7688_00955 | Not Available | Positive | 991881 - 992840 | 36824.2 |
| 3-deoxy-manno-octulosonate cytidylyltransferase | SHM7688_00956 | Not Available | Positive | 992779 - 993483 | 26116.2 |
| d-3-phosphoglycerate dehydrogenase | SHM7688_00957 | O49485 | Positive | 993480 - 994406 | 33199.1 |
| hypothetical protein | SHM7688_00958 | Not Available | Positive | 994443 - 996878 | 90829.8 |
| gdp-mannose 4,6-dehydratase | SHM7688_00959 | Q56598 | Positive | 996915 - 998039 | 42167.1 |
| hypothetical protein | SHM7688_00960 | Not Available | Positive | 998114 - 998329 | 8293.07 |
| hypothetical protein | SHM7688_00961 | Not Available | Positive | 998460 - 999212 | 27889.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
