Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| polysialic acid transport atp-binding protein kpst | SHM7688_00942 | Not Available | Positive | 969704 - 970384 | 24857.8 |
| glycosyltransferase, gg-bacteroidales peptide system | SHM7688_00943 | Not Available | Positive | 970399 - 971955 | 59019.3 |
| putative glycosyltransferase epsh | SHM7688_00944 | A0A0H2URH7 | Negative | 971970 - 977981 | 222585.0 |
| hypothetical protein | SHM7688_00945 | Not Available | Positive | 978257 - 979027 | 28909.6 |
| udp-galactopyranose mutase precursor | SHM7688_00946 | Q48485 | Positive | 979199 - 980386 | 45081.5 |
| hypothetical protein | SHM7688_00947 | Not Available | Positive | 980436 - 980534 | 3674.25 |
| udp-glucose 6-dehydrogenase tuad | SHM7688_00948 | O54068 | Positive | 980531 - 981847 | 47470.3 |
| hypothetical protein | SHM7688_00949 | Not Available | Positive | 982162 - 982740 | 21615.9 |
| chromosome segregation protein smc | SHM7688_00950 | Not Available | Positive | 982826 - 984859 | 75099.1 |
| hypothetical protein | SHM7688_00951 | Not Available | Positive | 984856 - 985827 | 36375.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
