Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative nudix hydrolase | SHM7688_00932 | A4WBH1 | Positive | 960187 - 960795 | 22169.5 |
| cca-adding enzyme | SHM7688_00933 | Q96Q11 | Positive | 960846 - 961955 | 39484.4 |
| adenosine nucleotide hydrolase nude | SHM7688_00934 | Not Available | Negative | 961952 - 962488 | 20081.9 |
| glucose-1-phosphate thymidylyltransferase 1 | SHM7688_00935 | B0RVK9 | Negative | 962577 - 963452 | 31584.6 |
| dtdp-4-dehydrorhamnose reductase | SHM7688_00936 | P55463 | Negative | 963449 - 964315 | 30501.3 |
| dtdp-glucose 4,6-dehydratase 2 | SHM7688_00937 | P55294 | Negative | 964539 - 965603 | 39554.7 |
| dtdp-4-dehydrorhamnose 3,5-epimerase | SHM7688_00938 | P55468 | Negative | 965600 - 966169 | 21085.9 |
| glycosyl transferase family 2 | SHM7688_00939 | Not Available | Positive | 966307 - 967281 | 37157.5 |
| polysialic acid transport protein kpsm | SHM7688_00940 | Not Available | Negative | 967285 - 968112 | 30573.5 |
| vi polysaccharide export inner membrane protein vexd | SHM7688_00941 | P57034 | Positive | 968201 - 969691 | 55628.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
