Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative sterol carrier protein | SHM7688_00922 | Not Available | Negative | 950320 - 950601 | 9734.86 |
| potassium efflux system kefa precursor | SHM7688_00923 | Not Available | Negative | 950710 - 952377 | 61760.1 |
| argininosuccinate synthase | SHM7688_00924 | Q1GCK1 | Negative | 952556 - 953782 | 45340.9 |
| hypothetical protein | SHM7688_00925 | Not Available | Positive | 953933 - 954673 | 27610.0 |
| hypothetical protein | SHM7688_00926 | Not Available | Positive | 954781 - 955521 | 26799.2 |
| l-threonine dehydratase biosynthetic ilva | SHM7688_00927 | P37946 | Positive | 955573 - 956811 | 44743.4 |
| tmao reductase sytem sensor tors | SHM7688_00928 | Not Available | Negative | 956906 - 957229 | 11661.6 |
| transcriptional regulatory protein afsq1 | SHM7688_00929 | Q04942 | Positive | 957375 - 958661 | 46799.8 |
| rna pyrophosphohydrolase | SHM7688_00930 | Not Available | Negative | 958683 - 959120 | 16330.9 |
| heat shock protein 33 | SHM7688_00931 | Q6LLS3 | Positive | 959199 - 960203 | 36590.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
