Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| oxygen-independent coproporphyrinogen-iii oxidase 1 | SHM7688_00912 | A5D7B1 | Negative | 939683 - 940840 | 43257.3 |
| non-canonical purine ntp pyrophosphatase | SHM7688_00913 | Q5LWF7 | Negative | 940833 - 941444 | 22198.3 |
| ribonuclease ph | SHM7688_00914 | Q16D02 | Negative | 941441 - 942157 | 25224.3 |
| heat-inducible transcription repressor hrca | SHM7688_00915 | Q11B41 | Positive | 942274 - 943338 | 38840.1 |
| hsp-70 cofactor | SHM7688_00916 | Q3IYI4 | Positive | 943348 - 943908 | 20703.3 |
| dna mismatch repair protein muts | SHM7688_00917 | Q5LWH0 | Negative | 944019 - 946664 | 94724.4 |
| ribokinase | SHM7688_00918 | P36945 | Positive | 946813 - 947682 | 30480.6 |
| peptide methionine sulfoxide reductase msra 2 | SHM7688_00919 | Q9A9E9 | Negative | 947780 - 948466 | 24760.5 |
| udp-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase | SHM7688_00920 | B3FN88 | Negative | 948567 - 949214 | 25077.1 |
| udp-glucose 4-epimerase | SHM7688_00921 | Not Available | Negative | 949211 - 950134 | 33209.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
