Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| shikimate dehydrogenase | SHM7688_00902 | Q1GCM4 | Negative | 930114 - 930947 | 29520.9 |
| maf-like protein ycef | SHM7688_00903 | Q16CZ1 | Negative | 930944 - 931543 | 22241.9 |
| putative membrane protein | SHM7688_00904 | Q53229 | Positive | 931970 - 932419 | 17456.8 |
| hypothetical protein | SHM7688_00905 | P52156 | Positive | 932542 - 933813 | 46891.4 |
| trna modification gtpase mnme | SHM7688_00906 | Q16CZ5 | Positive | 933824 - 935122 | 46261.1 |
| glucose-inhibited division protein a | SHM7688_00907 | Q5LWF3 | Positive | 935146 - 937008 | 67068.2 |
| ribosomal rna small subunit methyltransferase g | SHM7688_00908 | Q1GCL8 | Positive | 937008 - 937646 | 23481.2 |
| sporulation initiation inhibitor protein soj | SHM7688_00909 | P0CAV7 | Positive | 937624 - 938433 | 29309.1 |
| chromosome-partitioning protein parb | SHM7688_00910 | P0CAV8 | Positive | 938446 - 939339 | 33189.8 |
| inner membrane protein yban | SHM7688_00911 | P0AAR6 | Negative | 939329 - 939682 | 12574.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
