Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SHM7688_00892 | Not Available | Positive | 921679 - 922743 | 37744.1 |
| unfoldase hslu | SHM7688_00893 | Q1GCN3 | Positive | 922756 - 924066 | 48276.8 |
| alpha/beta hydrolase family protein | SHM7688_00894 | Not Available | Positive | 924131 - 925225 | 39848.4 |
| smr domain protein | SHM7688_00895 | Not Available | Negative | 925241 - 925834 | 21840.8 |
| membrane-bound lytic murein transglycosylase a precursor | SHM7688_00896 | Not Available | Negative | 925831 - 926880 | 38177.8 |
| tim44-like domain protein | SHM7688_00897 | Not Available | Negative | 926877 - 927536 | 24094.5 |
| suppressor of f exclusion of phage t7 | SHM7688_00898 | P37147 | Positive | 927641 - 928192 | 19619.9 |
| protein-export protein secb | SHM7688_00899 | Q1GCM7 | Positive | 928248 - 928739 | 18270.8 |
| dna polymerase iii subunit epsilon | SHM7688_00900 | Q1RJM1 | Negative | 928779 - 929516 | 26870.0 |
| dephospho-coa kinase | SHM7688_00901 | Q5LLN2 | Negative | 929509 - 930117 | 21689.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
