Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sensor histidine kinase regb | SHM7688_00882 | P0C0Z0 | Positive | 908073 - 909458 | 51317.6 |
| sensor protein divl | SHM7688_00883 | Not Available | Positive | 909563 - 911068 | 56327.8 |
| adp-binding protein | SHM7688_00884 | O05515 | Positive | 911119 - 911592 | 17174.2 |
| putative phosphotransferase related to ser/thr protein kinases | SHM7688_00885 | Q9A2M2 | Positive | 911589 - 912614 | 37935.1 |
| bifunctional protein glmu | SHM7688_00886 | Q9A2M1 | Positive | 912614 - 913282 | 23870.8 |
| double-strand break repair protein addb | SHM7688_00887 | Not Available | Positive | 913275 - 916214 | 108961.0 |
| atp-dependent helicase/nuclease subunit a | SHM7688_00888 | Q03NA7 | Positive | 916211 - 919621 | 125128.0 |
| thioredoxin | SHM7688_00889 | P08058 | Positive | 919681 - 920001 | 11154.2 |
| putative phosphotransferase related to ser/thr protein kinases | SHM7688_00890 | Not Available | Negative | 920021 - 920983 | 36318.4 |
| atp-dependent protease subunit hslv | SHM7688_00891 | Q16CY0 | Positive | 921061 - 921618 | 19407.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
