Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SHM7688_00872 | Not Available | Negative | 901177 - 901494 | 10918.1 |
| hypothetical protein | SHM7688_00873 | Not Available | Positive | 901822 - 901944 | 4193.48 |
| hypothetical protein | SHM7688_00874 | P42506 | Positive | 902053 - 902652 | 22205.0 |
| putative phosphinothricin acetyltransferase ywnh | SHM7688_00875 | Not Available | Positive | 902681 - 903172 | 17698.0 |
| leucine-responsive regulatory protein | SHM7688_00876 | P42179 | Negative | 903175 - 903630 | 17013.9 |
| leucine dehydrogenase | SHM7688_00877 | P13154 | Positive | 903784 - 904830 | 36391.9 |
| general stress protein 18 | SHM7688_00878 | Q5AF03 | Negative | 904901 - 905590 | 24342.6 |
| d-malate degradation protein r | SHM7688_00879 | P43011 | Positive | 905729 - 906613 | 32972.4 |
| response regulator prra | SHM7688_00880 | Q53228 | Negative | 906735 - 907304 | 20693.8 |
| sco1/senc | SHM7688_00881 | Q52720 | Negative | 907360 - 907989 | 23101.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
