Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| heme biosynthesis-associated tpr protein | SHM7688_00862 | Not Available | Negative | 891981 - 893453 | 53146.9 |
| mitochondrial inner membrane protein | SHM7688_00863 | Not Available | Negative | 893464 - 894750 | 43612.0 |
| uroporphyrinogen-iii synthase | SHM7688_00864 | Not Available | Negative | 894826 - 895536 | 24374.6 |
| t(6)a37 threonylcarbamoyladenosine biosynthesis protein | SHM7688_00865 | Q5LLR7 | Positive | 895618 - 896715 | 37742.7 |
| glycerol-3-phosphate dehydrogenase | SHM7688_00866 | Q1GCQ4 | Positive | 896712 - 897665 | 32967.1 |
| ycii-like protein | SHM7688_00867 | Not Available | Positive | 897669 - 897944 | 9641.7 |
| eve domain protein | SHM7688_00868 | Q91YJ3 | Positive | 897944 - 898363 | 15849.8 |
| hypothetical protein | SHM7688_00869 | Not Available | Positive | 898416 - 898811 | 13833.2 |
| hypothetical protein | SHM7688_00870 | Not Available | Negative | 899185 - 899526 | 12556.1 |
| adenosylhomocysteinase | SHM7688_00871 | Q9ZNA5 | Negative | 899722 - 901107 | 50237.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
