Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-thr | Not Available | Not Available | Positive | 882049 - 882124 | Not Available |
| pyridoxamine 5'-phosphate oxidase, fmn-binding family | SHM7688_00853 | Not Available | Negative | 882224 - 882832 | 22417.6 |
| hypothetical protein | SHM7688_00854 | Not Available | Negative | 882844 - 883314 | 18532.5 |
| hypothetical protein | SHM7688_00855 | Not Available | Negative | 883412 - 883582 | 5992.35 |
| hth-type transcriptional repressor kstr2 | SHM7688_00856 | Not Available | Positive | 883767 - 884357 | 22313.8 |
| fructokinase | SHM7688_00857 | A0KYQ6 | Positive | 884621 - 885523 | 30483.5 |
| n-acetylglucosamine-6-phosphate deacetylase | SHM7688_00858 | O32445 | Positive | 885576 - 886694 | 38896.9 |
| phosphate-import protein phnd precursor | SHM7688_00859 | O69052 | Positive | 887226 - 888131 | 33140.9 |
| signal transduction histidine-protein kinase bara | SHM7688_00860 | Not Available | Positive | 888134 - 890584 | 89800.4 |
| d-amino acid dehydrogenase small subunit | SHM7688_00861 | B8IJ86 | Positive | 890659 - 891912 | 44933.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
