Shimia marina

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Shimia

Description

Shimia marina is a Gram-negative, rod-shaped bacterium that is non-spore-forming and thrives in aerobic conditions, with an optimal growth temperature of 32.0°C. This microbe's Gram-negative cell wall structure is characterized by a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which may influence its interactions within various environments. The rod shape of Shimia marina is typical of many bacteria, which can play a role in its motility and surface attachment mechanisms. The requirement for oxygen suggests that it may be involved in aerobic metabolic processes, potentially utilizing oxygen as a terminal electron acceptor in respiration. The specific temperature preference of 32.0°C may indicate that Shimia marina is adapted to moderately warm environments, which could be reflective of its isolation from marine habitats where temperatures fluctuate within this range. This adaptability to specific thermal conditions may suggest ecological roles in nutrient cycling and organic matter degradation in its native habitat. Overall, the physiological traits of Shimia marina suggest that it might occupy a niche in marine ecosystems where aerobic decomposition processes are crucial, contributing to the overall health and balance of microbial communities in such environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusShimia
SpeciesShimia marina
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature32
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shimia marina genome assembly S.marinaCECT7688_Velvet_Prokka,

Gene Summary

Adenine Count

837910 bp

Thymine Count

866653 bp

Guanine Count

1182103 bp

Cytosine Count

1111295 bp

Genome Length

4001860 bp

Protein-coding Genes

3862 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
bifunctional biotin--[acetyl-coa-carboxylase] synthetase/biotin operon repressorSHM7688_00842Not AvailablePositive872080 - 87276025749.2
hypothetical proteinSHM7688_00843Not AvailableNegative872777 - 87343324154.9
hypothetical proteinSHM7688_00844Not AvailableNegative873540 - 87413320953.4
l-asparaginase iiSHM7688_00845Not AvailablePositive874241 - 87523635300.2
sulfite exporter taue/safeSHM7688_00846P29942Negative875346 - 87610425964.0
phosphoserine phosphataseSHM7688_00847O74382Negative876108 - 87698631000.4
phosphoserine aminotransferaseSHM7688_00848Q8TNI1Positive877275 - 87843241396.1
d-3-phosphoglycerate dehydrogenaseSHM7688_00849P73821Positive878519 - 88011456565.3
bis(5'-nucleosyl)-tetraphosphatase prpeSHM7688_00850Not AvailablePositive880205 - 88095127763.3
methionine import atp-binding protein metn 2SHM7688_00851P9WQJ4Negative880948 - 88175729954.6

Displaying genes 871 – 880 of 3928 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

271 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da

Displaying 1–10 of 271 metabolites

Health Effects

No health effects information available for this bacterium.