Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional biotin--[acetyl-coa-carboxylase] synthetase/biotin operon repressor | SHM7688_00842 | Not Available | Positive | 872080 - 872760 | 25749.2 |
| hypothetical protein | SHM7688_00843 | Not Available | Negative | 872777 - 873433 | 24154.9 |
| hypothetical protein | SHM7688_00844 | Not Available | Negative | 873540 - 874133 | 20953.4 |
| l-asparaginase ii | SHM7688_00845 | Not Available | Positive | 874241 - 875236 | 35300.2 |
| sulfite exporter taue/safe | SHM7688_00846 | P29942 | Negative | 875346 - 876104 | 25964.0 |
| phosphoserine phosphatase | SHM7688_00847 | O74382 | Negative | 876108 - 876986 | 31000.4 |
| phosphoserine aminotransferase | SHM7688_00848 | Q8TNI1 | Positive | 877275 - 878432 | 41396.1 |
| d-3-phosphoglycerate dehydrogenase | SHM7688_00849 | P73821 | Positive | 878519 - 880114 | 56565.3 |
| bis(5'-nucleosyl)-tetraphosphatase prpe | SHM7688_00850 | Not Available | Positive | 880205 - 880951 | 27763.3 |
| methionine import atp-binding protein metn 2 | SHM7688_00851 | P9WQJ4 | Negative | 880948 - 881757 | 29954.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
