Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SHM7688_00832 | Not Available | Positive | 862469 - 863578 | 39816.1 |
| hypothetical protein | SHM7688_00833 | Not Available | Negative | 863579 - 863944 | 13420.6 |
| hypothetical protein | SHM7688_00834 | Not Available | Positive | 864269 - 865849 | 55308.2 |
| glutamine-binding periplasmic protein precursor | SHM7688_00835 | Not Available | Positive | 865922 - 867043 | 41005.5 |
| 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferase | SHM7688_00836 | A8LJS9 | Negative | 867115 - 867942 | 29444.1 |
| phenylserine dehydratase | SHM7688_00837 | Q10725 | Negative | 868022 - 868945 | 31473.6 |
| putative lysine decarboxylase | SHM7688_00838 | Not Available | Positive | 869021 - 869854 | 30906.7 |
| hypothetical protein | SHM7688_00839 | Not Available | Negative | 869954 - 870343 | 13217.2 |
| dual-specificity rna methyltransferase rlmn | SHM7688_00840 | Q1GC70 | Negative | 870415 - 871608 | 44575.7 |
| hypothetical protein | SHM7688_00841 | Not Available | Positive | 871773 - 872078 | 11239.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
