Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| spermidine/putrescine transport system permease protein potb | SHM7688_00822 | P0A2J8 | Positive | 850630 - 851904 | 46784.8 |
| inner membrane abc transporter permease protein ydcv | SHM7688_00823 | P0A625 | Positive | 851910 - 852761 | 31079.6 |
| putative l,d-transpeptidase erfk/srfk precursor | SHM7688_00824 | P39176 | Positive | 852876 - 853454 | 21474.8 |
| membrane-bound lytic murein transglycosylase b precursor | SHM7688_00825 | P41052 | Negative | 853584 - 854942 | 49222.9 |
| hth domain protein | SHM7688_00826 | O34920 | Negative | 855010 - 855759 | 28059.9 |
| hypothetical protein | SHM7688_00827 | Not Available | Positive | 855805 - 856539 | 26955.3 |
| ribonuclease r | SHM7688_00828 | P21499 | Negative | 856520 - 858781 | 82536.6 |
| transferase 1, rsam/selenodomain-associated | SHM7688_00829 | Not Available | Negative | 858900 - 859487 | 21282.8 |
| succinyl-diaminopimelate desuccinylase | SHM7688_00830 | Q1GC88 | Negative | 859471 - 860616 | 40491.7 |
| hypothetical protein | SHM7688_00831 | Not Available | Positive | 860907 - 862472 | 55709.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
