Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thiamine kinase | SHM7688_00812 | Not Available | Positive | 839489 - 840253 | 27851.4 |
| gamma-glutamylputrescine oxidoreductase | SHM7688_00813 | Not Available | Negative | 840232 - 841557 | 48259.5 |
| inner membrane abc transporter permease protein ydcv | SHM7688_00814 | Not Available | Negative | 841554 - 842372 | 29509.9 |
| putrescine transport system permease protein poth | SHM7688_00815 | Not Available | Negative | 842369 - 843256 | 33433.8 |
| spermidine/putrescine import atp-binding protein pota | SHM7688_00816 | P31134 | Negative | 843260 - 844384 | 41354.8 |
| putrescine-binding periplasmic protein precursor | SHM7688_00817 | Q02UB7 | Negative | 844459 - 845544 | 39167.2 |
| hth-type transcriptional regulator mcbr | SHM7688_00818 | Not Available | Positive | 845693 - 846409 | 25877.1 |
| taurine--pyruvate aminotransferase | SHM7688_00819 | Not Available | Positive | 846496 - 847884 | 50565.3 |
| spermidine/putrescine import atp-binding protein pota | SHM7688_00820 | A1TAI4 | Positive | 848191 - 849294 | 40837.0 |
| abc-type uncharacterized transport system, periplasmic component | SHM7688_00821 | Q9I6R6 | Positive | 849379 - 850485 | 40133.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
