Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| flagellar biosynthetic protein flhb | SHM7688_00792 | P35538 | Positive | 825653 - 826738 | 39671.6 |
| hypothetical protein | SHM7688_00793 | Not Available | Positive | 826735 - 827145 | 15647.8 |
| flagellar basal body-associated protein flil | SHM7688_00794 | Not Available | Negative | 827238 - 827741 | 18103.6 |
| basal body l-ring protein | SHM7688_00795 | Q5LWX7 | Negative | 827754 - 828485 | 26417.3 |
| flagellar basal body p-ring biosynthesis protein flga | SHM7688_00796 | Not Available | Negative | 828498 - 828920 | 14787.3 |
| distal rod protein | SHM7688_00797 | Q06172 | Negative | 828922 - 829707 | 27257.8 |
| distal rod protein | SHM7688_00798 | Q98HE3 | Negative | 829723 - 830436 | 25464.1 |
| flagellar biosynthetic protein fliq | SHM7688_00799 | Not Available | Negative | 830438 - 830707 | 9635.21 |
| flagellar hook-basal body protein flie | SHM7688_00800 | Not Available | Negative | 830707 - 830994 | 10130.2 |
| putative proximal rod protein | SHM7688_00801 | Q52944 | Negative | 831016 - 831402 | 14046.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
