Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SHM7688_00782 | Not Available | Negative | 814512 - 815108 | 21907.5 |
| flagellar m-ring protein | SHM7688_00783 | Q04954 | Negative | 815108 - 816751 | 57948.8 |
| flagellar flil protein | SHM7688_00784 | Not Available | Positive | 816875 - 817372 | 17841.4 |
| hypothetical protein | SHM7688_00785 | Not Available | Positive | 817384 - 818001 | 22050.1 |
| hypothetical protein | SHM7688_00786 | Not Available | Positive | 818017 - 818670 | 23279.3 |
| chemotaxis protein mota | SHM7688_00787 | P97215 | Positive | 818731 - 819600 | 31447.5 |
| hypothetical protein | SHM7688_00788 | Not Available | Positive | 819597 - 821927 | 83771.7 |
| transglycosylase slt domain protein | SHM7688_00789 | Not Available | Positive | 822058 - 822792 | 26629.6 |
| flagellar biosynthesis protein flha | SHM7688_00790 | Q03845 | Positive | 822796 - 824883 | 74850.9 |
| flagellar biosynthesis protein flir | SHM7688_00791 | P54702 | Positive | 824883 - 825656 | 26933.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
