Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-hydroxy-3-methylglutaryl-coenzyme a reductase | SHM7688_00772 | O59469 | Positive | 805862 - 807007 | 41305.0 |
| isopentenyl-diphosphate delta-isomerase | SHM7688_00773 | Q8L1I4 | Positive | 807004 - 808053 | 37724.0 |
| polyketide biosynthesis 3-hydroxy-3-methylglutaryl-acp synthase pksg | SHM7688_00774 | Q9FD71 | Positive | 808067 - 809230 | 42903.8 |
| mevalonate kinase | SHM7688_00775 | Q9V187 | Positive | 809193 - 810350 | 40853.7 |
| mevalonate kinase | SHM7688_00776 | Q50559 | Positive | 810392 - 811264 | 31092.1 |
| diphosphomevalonate decarboxylase | SHM7688_00777 | Q4WNV9 | Positive | 811257 - 812264 | 36082.6 |
| Trna-pro | Not Available | Not Available | Positive | 812343 - 812419 | Not Available |
| carboxylate/amino acid/amine transporter | SHM7688_00779 | Not Available | Negative | 812468 - 813421 | 34024.8 |
| flagellar biosynthetic protein flip precursor | SHM7688_00780 | Q45980 | Negative | 813501 - 814238 | 26564.3 |
| flagellar motor switch protein | SHM7688_00781 | Not Available | Negative | 814238 - 814519 | 10087.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
