Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| epoxyqueuosine reductase | SHM7688_00762 | F7ZDR3 | Negative | 792726 - 793781 | 38592.0 |
| maleylpyruvate isomerase | SHM7688_00763 | A0A0H3CDY2 | Negative | 793868 - 794533 | 25660.8 |
| penicillin-binding protein 2d | SHM7688_00764 | Q28VR9 | Negative | 794600 - 795316 | 26665.6 |
| hypothetical protein | SHM7688_00765 | Not Available | Negative | 795460 - 795825 | 12582.7 |
| hypothetical protein | SHM7688_00766 | Not Available | Negative | 795973 - 796635 | 24207.8 |
| stalked cell differentiation-controlling protein | SHM7688_00767 | Q9A5I5 | Positive | 796894 - 797829 | 34343.6 |
| glutamate synthase | SHM7688_00768 | Q05755 | Negative | 797914 - 802452 | 163998.0 |
| glutamate synthase | SHM7688_00769 | Q05756 | Negative | 802666 - 804102 | 51903.2 |
| undecaprenyl-diphosphatase | SHM7688_00770 | Q5LLZ3 | Positive | 804323 - 805126 | 28692.9 |
| hypothetical protein | SHM7688_00771 | Q1GC53 | Negative | 805183 - 805446 | 9704.86 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
