Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| voltage-gated potassium channel | SHM7688_00752 | Not Available | Negative | 783280 - 783936 | 24095.2 |
| putative inner membrane protein | SHM7688_00753 | P0AFS7 | Positive | 784052 - 785128 | 37395.4 |
| inner membrane protein yibh | SHM7688_00754 | Not Available | Positive | 785128 - 786192 | 38421.2 |
| hypothetical protein | SHM7688_00755 | Not Available | Positive | 786182 - 787252 | 37717.5 |
| putative dmt superfamily transporter inner membrane protein | SHM7688_00756 | Not Available | Positive | 787342 - 788217 | 30319.2 |
| thiol:disulfide interchange protein | SHM7688_00757 | Not Available | Positive | 788275 - 788988 | 24327.5 |
| thioredoxin 2 | SHM7688_00758 | Not Available | Positive | 789004 - 789411 | 14740.8 |
| peptide methionine sulfoxide reductase msrb | SHM7688_00759 | P65447 | Positive | 789557 - 790009 | 16873.5 |
| peptide methionine sulfoxide reductase msra 3 | SHM7688_00760 | Q7UJI2 | Positive | 790006 - 790506 | 18768.9 |
| acetophenone carboxylase gamma subunit | SHM7688_00761 | Q01262 | Negative | 790570 - 792588 | 70685.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
